Transcript: lnc-C8A-1:1

Basic information

LNCipedia transcript ID: lnc-C8A-1:1 
LNCipedia gene ID: lnc-C8A-1
Ensembl Gene ID: ENSG00000236341
Ensembl Transcript ID: ENST00000417420
Location (hg19): chr1:57429559-57462430
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 610 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417420.1; RP5-1103B4.3-001; OTTHUMT00000126523.1; NONHSAT003464
Alternative gene names: ENSG00000236341.1; RP5-1103B4.3; OTTHUMG00000056480.1; AL161740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0571 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8A-1:1
4.0 lnc-C8A-1:1
4.1 lnc-C8A-1:1
5.0 lnc-C8A-1:1
5.1 lnc-MROH7-TTC4-21:1
5.2 lnc-C8A-1:1