Transcript: lnc-C8A-1:8

Basic information

LNCipedia transcript ID: lnc-C8A-1:8 
LNCipedia gene ID: lnc-C8A-1
Location (hg19): chr1:57457023-57480373
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1937 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000441502.1; RP6-239D12.1-001; OTTHUMT00000022901.1; NONHSAT003467
Alternative gene names: ENSG00000231229.1; RP6-239D12.1; OTTHUMG00000008313.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5457 non-coding 
CPAT coding probability 17.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8A-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8A-2:1
4.0 lnc-C8A-1:8
4.1 lnc-C8A-1:8
5.0 lnc-C8A-1:8
5.1 lnc-MROH7-TTC4-21:2
5.2 lnc-C8A-1:8