Transcript: lnc-C8orf86-1:4

Basic information

LNCipedia transcript ID: lnc-C8orf86-1:4 
LNCipedia gene ID: lnc-C8orf86-1
Ensembl Gene ID: ENSG00000253361
Ensembl Transcript ID: ENST00000521623
Location (hg19): chr8:38401170-38410198
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521623; ENST00000521623.1; RP11-675F6.3-001; OTTHUMT00000376670.1; NONHSAT126109
Alternative gene names: ENSG00000253361; RP11-675F6.3; ENSG00000253361.1; OTTHUMG00000163993.1; AC069120.1; ENSG00000253361.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.3555 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf86-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf86-1:4
3.1 lnc-C8orf86-1:4
4.0 lnc-C8orf86-1:4
4.1 lnc-C8orf86-1:4
5.0 lnc-C8orf86-1:4
5.1 lnc-C8orf86-1:4
5.2 lnc-C8orf86-1:4