Transcript: lnc-C9orf16-1:2

Basic information

LNCipedia transcript ID: lnc-C9orf16-1:2 
LNCipedia gene ID: lnc-C9orf16-1
Location (hg19): chr9:130919332-130921865
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 266 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016167; NONHSAT134911
Alternative gene names: XLOC_007577; linc-C9orf16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.8667 non-coding 
CPAT coding probability 10.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf16-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf16-1:2
3.1 lnc-C9orf16-1:2
4.0 lnc-C9orf16-1:2
4.1 lnc-C9orf16-1:2
5.0 lnc-C9orf16-1:2
5.1 lnc-PTPA-64:2
5.2 lnc-C9orf16-1:2