Transcript: lnc-C9orf66-3:1

Basic information

LNCipedia transcript ID: lnc-C9orf66-3:1 
LNCipedia gene ID: lnc-C9orf66-3
Location (hg19): chr9:673817-685555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 781 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000421645.1; RP11-130C19.3-001; OTTHUMT00000051483.1
Alternative gene names: ENSG00000227914.1; RP11-130C19.3; OTTHUMG00000019433.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.7362 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf66-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf66-3:1
4.0 lnc-C9orf66-3:1
4.1 lnc-C9orf66-3:1
5.0 lnc-C9orf66-3:1
5.1 lnc-CER1-97:1
5.2 lnc-C9orf66-3:1