Transcript: lnc-C9orf66-6:1

Basic information

LNCipedia transcript ID: lnc-C9orf66-6:1 
LNCipedia gene ID: lnc-C9orf66-6
Location (hg19): chr9:1041219-1042520
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 780 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015785; ENST00000453789.1; RP11-147I11.2-001; OTTHUMT00000051497.1; NONHSAT129958
Alternative gene names: XLOC_007630; linc-C9orf66-1; ENSG00000231191.1; RP11-147I11.2; OTTHUMG00000019439.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.3169 non-coding 
CPAT coding probability 4.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf66-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf66-3:1
3.1 lnc-C9orf66-6:1
4.0 lnc-C9orf66-6:1
4.1 lnc-C9orf66-6:1
5.0 lnc-C9orf66-6:1
5.1 lnc-CER1-91:1
5.2 lnc-C9orf66-6:1