Transcript: lnc-CA1-5:1

Basic information

LNCipedia transcript ID: lnc-CA1-5:1 
LNCipedia gene ID: lnc-CA1-5
Location (hg19): chr8:86555986-86562937
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 706 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3637_chr8:86555985-86562937_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7516 non-coding 
CPAT coding probability 80.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CA1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-REXO1L1-2:1
4.0 lnc-REXO1L1-2:1
4.1 lnc-REXO1L1-2:1
5.0 lnc-REXO1L1-2:1
5.1 lnc-ZNF706-240:1
5.2 lnc-CA1-5:1