Transcript: lnc-CA5A-10:1

Basic information

LNCipedia transcript ID: lnc-CA5A-10:1 
LNCipedia gene ID: lnc-CA5A-10
Location (hg19): chr16:88001777-88002035
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 259 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr16_8573_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.8026 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA5A-10:1
4.0 lnc-CA5A-10:1
4.1 lnc-CA5A-10:1
5.0 lnc-CA5A-10:1
5.1 lnc-KLHDC4-12:1
5.2 lnc-CA5A-10:1