Transcript: lnc-CA5A-1:1

Basic information

LNCipedia transcript ID: lnc-CA5A-1:1 
LNCipedia gene ID: lnc-CA5A-1
Ensembl Gene ID: ENSG00000261193
Ensembl Transcript ID: ENST00000568267
Location (hg19): chr16:88112767-88120989
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568267.1; RP11-863P13.5-001; OTTHUMT00000430443.1; NONHSAT144344
Alternative gene names: ENSG00000261193.1; RP11-863P13.5; OTTHUMG00000175539.1; AC134312.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.5883 non-coding 
CPAT coding probability 3.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA5A-1:1
4.0 lnc-CA5A-1:1
4.1 lnc-CA5A-1:1
5.0 lnc-CA5A-1:1
5.1 lnc-KLHDC4-17:1
5.2 lnc-CA5A-1:1