Transcript: lnc-CA5A-2:2

Basic information

LNCipedia transcript ID: lnc-CA5A-2:2 
LNCipedia gene ID: lnc-CA5A-2
Ensembl Gene ID: ENSG00000205037
Ensembl Transcript ID: ENST00000378417
Location (hg19): chr16:88121647-88134565
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3468 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000378417.1; RP11-863P13.4-001; OTTHUMT00000430445.1; NONHSAT144349
Alternative gene names: ENSG00000205037.2; RP11-863P13.4; OTTHUMG00000175541.1; AC134312.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.4948 non-coding 
CPAT coding probability 83.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CA5A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA5A-2:2
4.0 lnc-CA5A-2:2
4.1 lnc-CA5A-2:2
5.0 lnc-CA5A-2:2
5.1 lnc-KLHDC4-18:3
5.2 lnc-CA5A-2:2