Transcript: lnc-CA5A-4:3

Basic information

LNCipedia transcript ID: lnc-CA5A-4:3 
LNCipedia gene ID: lnc-CA5A-4
Location (hg19): chr16:88212561-88220293
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6888 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024783; NONHSAT144365
Alternative gene names: XLOC_012057; linc-CA5A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.4543 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA5A-2:3
3.1 lnc-CA5A-4:3
4.0 lnc-CA5A-4:3
4.1 lnc-CA5A-4:3
5.0 lnc-CA5A-4:3
5.1 lnc-KLHDC4-20:3
5.2 lnc-CA5A-4:3