Transcript: lnc-CA7-2:1

Basic information

LNCipedia transcript ID: lnc-CA7-2:1 
LNCipedia gene ID: lnc-CA7-2
Location (hg19): chr16:66923072-66924664
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 729 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000561811.1; RP11-61A14.3-001; OTTHUMT00000423244.1; NONHSAT143049
Alternative gene names: ENSG00000261088.1; RP11-61A14.3; OTTHUMG00000173479.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.3687 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA7-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA7-2:1
4.0 lnc-CA7-2:1
4.1 lnc-CA7-2:1
5.0 lnc-CA7-2:1
5.1 lnc-NOL3-25:1
5.2 lnc-CA7-2:1