Transcript: lnc-CA7-2:2

Basic information

LNCipedia transcript ID: lnc-CA7-2:2 
LNCipedia gene ID: lnc-CA7-2
Location (hg19): chr16:66923094-66924996
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1903 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000563086.1; RP11-61A14.3-002; OTTHUMT00000423245.1; NONHSAT143050
Alternative gene names: ENSG00000261088.1; RP11-61A14.3; OTTHUMG00000173479.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9536 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA7-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA7-2:2
4.0 lnc-CA7-2:2
4.1 lnc-CA7-2:2
5.0 lnc-CA7-2:2
5.1 lnc-NOL3-25:2
5.2 lnc-CA7-2:2