Transcript: lnc-CA7-4:1

Basic information

LNCipedia transcript ID: lnc-CA7-4:1 
LNCipedia gene ID: lnc-CA7-4
Ensembl Gene ID: ENSG00000246777
Ensembl Transcript ID: ENST00000501143
Location (hg19): chr16:66785655-66788643
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2894 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501143; ENST00000501143.1; RP11-61A14.4-001; OTTHUMT00000423240.1
Alternative gene names: ENSG00000246777; AC044802.1; ENSG00000246777.1; RP11-61A14.4; OTTHUMG00000173477.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.3656 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA7-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA7-1:1
3.1 lnc-CA7-4:1
4.0 lnc-CA7-4:1
4.1 lnc-CA7-4:1
5.0 lnc-CA7-4:1
5.1 lnc-NOL3-32:2
5.2 lnc-CA7-4:1