Transcript: lnc-CAAP1-4:5

Basic information

LNCipedia transcript ID: lnc-CAAP1-4:5 
LNCipedia gene ID: lnc-CAAP1-4
Location (hg19): chr9:26261006-26261933
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000108026.1|FTMT23400002096.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.4859 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAAP1-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C9orf82-4:3
5.0 lnc-C9orf82-4:3
5.1 lnc-CD72-108:5
5.2 lnc-CAAP1-4:5