Transcript: lnc-CAB39L-10:1

Basic information

LNCipedia transcript ID: lnc-CAB39L-10:1 
LNCipedia gene ID: lnc-CAB39L-10
Location (hg19): chr13:49516047-49554130
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1398 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001vdx_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.4869 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAB39L-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAB39L-4:1
4.0 lnc-CAB39L-4:1
4.1 lnc-CAB39L-4:1
5.0 lnc-CAB39L-4:1
5.1 lnc-CCDC169-147:1
5.2 lnc-CAB39L-10:1