Transcript: lnc-CACNA2D3-4:1

Basic information

LNCipedia transcript ID: lnc-CACNA2D3-4:1 
LNCipedia gene ID: lnc-CACNA2D3-4
Ensembl Gene ID: ENSG00000240777
Ensembl Transcript ID: ENST00000472243
Location (hg19): chr3:55644631-55647132
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000472243; ENST00000472243.2; RP11-58O15.1-001; OTTHUMT00000369728.1; NONHSAT090038
Alternative gene names: ENSG00000240777; RP11-58O15.1; ENSG00000240777.2; OTTHUMG00000162604.1; AC025572.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.022 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNA2D3-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNA2D3-3:1
3.1 lnc-CACNA2D3-4:1
4.0 lnc-CACNA2D3-4:1
4.1 lnc-CACNA2D3-4:1
5.0 lnc-CACNA2D3-4:1
5.1 lnc-IL17RB-8:1
5.2 lnc-CACNA2D3-4:1