Transcript: lnc-CADM2-7:1

Basic information

LNCipedia transcript ID: lnc-CADM2-7:1 
LNCipedia gene ID: lnc-CADM2-7
Ensembl Gene ID: ENSG00000242009
Ensembl Transcript ID: ENST00000471614
Location (hg19): chr3:81889698-81972012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005552; ENST00000471614; ENST00000471614.1; RP11-359D24.1-001; OTTHUMT00000352889.1; NONHSAT090621
Alternative gene names: XLOC_002719; linc-CADM2-5; ENSG00000242009; RP11-359D24.1; ENSG00000242009.1; OTTHUMG00000159007.1; AC129807.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.0587 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CADM2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM2-7:1
3.1 lnc-CADM2-7:1
4.0 lnc-CADM2-7:1
4.1 lnc-CADM2-7:1
5.0 lnc-CADM2-7:1
5.1 lnc-CADM2-7:1
5.2 lnc-CADM2-7:1