Transcript: lnc-CAGE1-5:1

Basic information

LNCipedia transcript ID: lnc-CAGE1-5:1 
LNCipedia gene ID: lnc-CAGE1-5
Location (hg19): chr6:7485320-7486708
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1263 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3102_chr6:7485319-7486708_heart
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.6431 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAGE1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAGE1-5:1
4.0 lnc-CAGE1-5:1
4.1 lnc-CAGE1-5:1
5.0 lnc-CAGE1-5:1
5.1 lnc-ECI2-192:1
5.2 lnc-CAGE1-5:1