Transcript: lnc-CALM1-8:2

Basic information

LNCipedia transcript ID: lnc-CALM1-8:2 
LNCipedia gene ID: lnc-CALM1-8
Location (hg19): chr14:90990806-90991472
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1108 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_9446_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.2335 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALM1-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALM1-8:2
4.0 lnc-CALM1-8:2
4.1 lnc-CALM1-8:2
5.0 lnc-CALM1-8:2
5.1 lnc-SPATA7-28:2
5.2 lnc-CALM1-8:2