Transcript: lnc-CAPRIN2-2:9

Basic information

LNCipedia transcript ID: lnc-CAPRIN2-2:9 
LNCipedia gene ID: lnc-CAPRIN2-2
Location (hg19): chr12:31116855-31158941
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 15190 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226472.3|MICT00000076257.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 60.0609 non-coding 
CPAT coding probability 6.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CAPRIN2-2:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CAPRIN2-2:9
5.0 lnc-CAPRIN2-2:9
5.1 lnc-WBP11-131:3
5.2 lnc-CAPRIN2-2:9