Transcript: lnc-CAPS-2:2

Basic information

LNCipedia transcript ID: lnc-CAPS-2:2 
LNCipedia gene ID: lnc-CAPS-2
Ensembl Gene ID: ENSG00000266983
Ensembl Transcript ID: ENST00000587836
RefSeq ID: NR_046376
Location (hg19): chr19:5978414-6020374
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 639 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060733; NR_046376; ENST00000587836.1; NR_046376.1
Alternative gene names: ENSG00000266983.1; CTC-232P5.1; AC011444.1; LOC100128568


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4895 non-coding 
CPAT coding probability 16.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPS-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAPS-2:2
4.0 lnc-CAPS-2:2
4.1 lnc-CAPS-2:2
5.0 lnc-CAPS-2:2
5.1 lnc-RPL36-14:7
5.2 lnc-CAPS-2:2