Transcript: lnc-CARD11-22:3

Basic information

LNCipedia transcript ID: lnc-CARD11-22:3 
LNCipedia gene ID: lnc-CARD11-22
Ensembl Gene ID: ENSG00000217455
Ensembl Transcript ID: ENST00000404626
Location (hg19): chr7:3186626-3214287
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000404626.4
Alternative gene names: ENSG00000217455.8; AC091801.1; AC073316.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -101.7301 non-coding 
CPAT coding probability 13.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CARD11-22:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC091801.1.1-1:5
4.1 lnc-AC091801.1.1-1:5
5.0 lnc-AC091801.1.1-1:5
5.1 lnc-GRIFIN-22:3
5.2 lnc-CARD11-22:3