Transcript: lnc-CARD19-4:1

Basic information

LNCipedia transcript ID: lnc-CARD19-4:1 
LNCipedia gene ID: lnc-CARD19-4
Ensembl Gene ID: ENSG00000203364
Ensembl Transcript ID: ENST00000366188
Location (hg19): chr9:95909322-95910838
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015717; ENST00000366188; ENST00000366188.2; RP11-370F5.4-001; OTTHUMT00000053137.1; NONHSAT133237
Alternative gene names: XLOC_007464; linc-WNK2; ENSG00000203364; RP11-370F5.4; ENSG00000203364.2; OTTHUMG00000020244.1; AL390760.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9826 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CARD19-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf89-1:1
3.1 lnc-C9orf89-1:1
4.0 lnc-C9orf89-4:1
4.1 lnc-C9orf89-4:1
5.0 lnc-C9orf89-4:1
5.1 lnc-FAM120A-10:1
5.2 lnc-CARD19-4:1