Transcript: lnc-CARS2-3:1

Basic information

LNCipedia transcript ID: lnc-CARS2-3:1 
LNCipedia gene ID: lnc-CARS2-3
Ensembl Gene ID: ENSG00000275880
Ensembl Transcript ID: ENST00000611744
Location (hg19): chr13:111265429-111268700
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3272 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611744.1
Alternative gene names: ENSG00000275880.1; RP11-90L1.8; AL139385.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.3171 non-coding 
CPAT coding probability 99.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CARS2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CARS2-2:1
4.1 lnc-CARS2-2:1
5.0 lnc-CARS2-2:1
5.1 lnc-COL4A1-11:1
5.2 lnc-CARS2-3:1