Transcript: lnc-CASP10-1:5

Basic information

LNCipedia transcript ID: lnc-CASP10-1:5 
LNCipedia gene ID: lnc-CASP10-1
Ensembl Gene ID: ENSG00000234431
Ensembl Transcript ID: ENST00000434645
Location (hg19): chr2:202031688-202032269
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 445 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003079; ENST00000434645; ENST00000434645.1; AC007283.5-001; OTTHUMT00000336738.1; NONHSAT076383
Alternative gene names: XLOC_001808; linc-CASP10-2; ENSG00000234431; AC007283.5; ENSG00000234431.2; OTTHUMG00000154717.1; AC007283.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0143 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASP10-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CFLAR-1:1
3.1 lnc-CFLAR-1:1
4.0 lnc-CFLAR-1:1
4.1 lnc-CFLAR-1:1
5.0 lnc-CFLAR-1:1
5.1 lnc-CASP10-1:3
5.2 lnc-CASP10-1:5