Transcript: lnc-CASP9-8:2

Basic information

LNCipedia transcript ID: lnc-CASP9-8:2 
LNCipedia gene ID: lnc-CASP9-8
Location (hg19): chr1:14923166-14924613
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 393 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT001011; FPKM1_group_177_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.5027 non-coding 
CPAT coding probability 10.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASP9-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf195-2:2
4.0 lnc-C1orf195-2:2
4.1 lnc-C1orf195-2:2
5.0 lnc-C1orf195-2:2
5.1 lnc-LRRC38-9:2
5.2 lnc-CASP9-8:2