Transcript: lnc-CAVIN2-1:1

Basic information

LNCipedia transcript ID: lnc-CAVIN2-1:1 
LNCipedia gene ID: lnc-CAVIN2-1
Location (hg19): chr2:192559715-192563971
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3922 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004538; NONHSAT076131
Alternative gene names: XLOC_002440; linc-STAT4-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.722 non-coding 
CPAT coding probability 18.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAVIN2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDPR-1:1
3.1 lnc-SDPR-1:1
4.0 lnc-SDPR-1:1
4.1 lnc-SDPR-1:1
5.0 lnc-SDPR-1:1
5.1 lnc-CALCRL-51:1
5.2 lnc-CAVIN2-1:1