Transcript: lnc-CBR1-2:1

Basic information

LNCipedia transcript ID: lnc-CBR1-2:1 
LNCipedia gene ID: lnc-CBR1-2
Ensembl Gene ID: ENSG00000236119
Ensembl Transcript ID: ENST00000445464
Location (hg19): chr21:37455157-37462712
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028842; ENST00000445464; ENST00000445464.1; AP000688.15-001; OTTHUMT00000194629.1; NONHSAT081940
Alternative gene names: XLOC_013930; linc-CBR3-2; ENSG00000236119; AP000688.15; ENSG00000236119.1; OTTHUMG00000086614.1; AP000688.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.058 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBR1-1:1
3.1 lnc-CBR1-2:1
4.0 lnc-CBR1-2:1
4.1 lnc-CBR1-2:1
5.0 lnc-CBR1-2:1
5.1 lnc-SIM2-27:1
5.2 lnc-CBR1-2:1