Transcript: lnc-CCAR2-3:2

Basic information

LNCipedia transcript ID: lnc-CCAR2-3:2 
LNCipedia gene ID: lnc-CCAR2-3
Location (hg19): chr8:22551152-22553909
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2121 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098162.1|MICT00000340406.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.1712 non-coding 
CPAT coding probability 13.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCAR2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-KIAA1967-3:3
5.0 lnc-KIAA1967-3:3
5.1 lnc-RHOBTB2-17:2
5.2 lnc-CCAR2-3:2