Transcript: lnc-CCDC107-1:3

Basic information

LNCipedia transcript ID: lnc-CCDC107-1:3 
LNCipedia gene ID: lnc-CCDC107-1
RefSeq ID: NR_135130
Location (hg19): chr9:35646267-35647473
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 951 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135130.1
Alternative gene names: LOC101926948


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -544.074 non-coding 
CPAT coding probability 25.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC107-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-RECK-12:3
5.1 lnc-RECK-12:3
5.2 lnc-CCDC107-1:3