Transcript: lnc-CCDC117-1:11

Basic information

LNCipedia transcript ID: lnc-CCDC117-1:11 
LNCipedia gene ID: lnc-CCDC117-1
Location (hg19): chr22:29196677-29235021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 223 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226471.2|ENST00000418292.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.4393 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC117-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC117-1:11
5.0 lnc-CCDC117-1:11
5.1 lnc-OSBP2-35:5
5.2 lnc-CCDC117-1:11