Transcript: lnc-CCDC140-5:3

Basic information

LNCipedia transcript ID: lnc-CCDC140-5:3 
LNCipedia gene ID: lnc-CCDC140-5
Ensembl Gene ID: ENSG00000234446
Ensembl Transcript ID: ENST00000453706
Location (hg19): chr2:222502263-222506533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 261 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453706; ENST00000453706.2; AC068489.1-001; OTTHUMT00000333848.2; NONHSAT147145
Alternative gene names: ENSG00000234446; AC068489.1; ENSG00000234446.2; OTTHUMG00000154090.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.2234 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC140-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC140-5:3
3.1 lnc-CCDC140-5:3
4.0 lnc-CCDC140-5:3
4.1 lnc-CCDC140-5:3
5.0 lnc-CCDC140-5:3
5.1 lnc-MOGAT1-21:4
5.2 lnc-CCDC140-5:3