Transcript: lnc-CCDC140-9:3

Basic information

LNCipedia transcript ID: lnc-CCDC140-9:3 
LNCipedia gene ID: lnc-CCDC140-9
Ensembl Gene ID: ENSG00000272944
Ensembl Transcript ID: ENST00000609776
Location (hg19): chr2:222437226-222439174
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1949 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609776.1
Alternative gene names: ENSG00000272944.1; CTD-2308L22.1; AC079834.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.7201 non-coding 
CPAT coding probability 51.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC140-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC140-10:1
4.0 lnc-CCDC140-10:1
4.1 lnc-CCDC140-9:3
5.0 lnc-CCDC140-9:3
5.1 lnc-MOGAT1-23:2
5.2 lnc-CCDC140-9:3