Transcript: lnc-CCDC146-1:12

Basic information

LNCipedia transcript ID: lnc-CCDC146-1:12 
LNCipedia gene ID: lnc-CCDC146-1
Ensembl Gene ID: ENSG00000265479
Ensembl Transcript ID: ENST00000636308
Location (hg19): chr7:76589152-76655050
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4646 bp
Exons: 15
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636308.1
Alternative gene names: ENSG00000265479.6; DTX2P1-UPK3BP1-PMS2P11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2189.6683 coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC146-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC146-1:12
5.0 lnc-CCDC146-1:12
5.1 lnc-FKBP6-93:1
5.2 lnc-CCDC146-1:12