Transcript: lnc-CCDC150-1:3

Basic information

LNCipedia transcript ID: lnc-CCDC150-1:3 
LNCipedia gene ID: lnc-CCDC150-1
RefSeq ID: NR_110226
Location (hg19): chr2:197124748-197128928
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1413 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110226; NR_110226.1
Alternative gene names: LOC101927482


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.3404 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC150-1:3 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC150-1:3
4.0 lnc-CCDC150-1:3
4.1 lnc-CCDC150-1:3
5.0 lnc-CCDC150-1:3
5.1 lnc-MAIP1-33:2
5.2 lnc-CCDC150-1:3