Transcript: lnc-CCDC171-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC171-1:2 
LNCipedia gene ID: lnc-CCDC171-1
Location (hg19): chr9:16036091-16060851
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 445 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00016539
Alternative gene names: XLOC_007290; linc-CNTLN-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.2006 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC171-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNAPC3-1:2
3.1 lnc-SNAPC3-1:2
4.0 lnc-C9orf93-1:7
4.1 lnc-C9orf93-1:7
5.0 lnc-C9orf93-1:7
5.1 lnc-RECK-189:6
5.2 lnc-CCDC171-1:2