Transcript: lnc-CCDC172-1:5

Basic information

LNCipedia transcript ID: lnc-CCDC172-1:5 
LNCipedia gene ID: lnc-CCDC172-1
Location (hg19): chr10:118036310-118040487
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 224 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018346; NONHSAT016484
Alternative gene names: XLOC_008630; linc-C10orf96


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.3589 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC172-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf96-1:1
3.1 lnc-C10orf96-1:1
4.0 lnc-C10orf96-1:1
4.1 lnc-C10orf96-1:1
5.0 lnc-C10orf96-1:1
5.1 lnc-VTI1A-38:5
5.2 lnc-CCDC172-1:5