Transcript: lnc-CCDC173-6:1

Basic information

LNCipedia transcript ID: lnc-CCDC173-6:1 
LNCipedia gene ID: lnc-CCDC173-6
Location (hg19): chr2:170558307-170573900
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 11835 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000050645.1|MICT00000202608.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 62.6873 coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC173-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C2orf77-6:5
5.0 lnc-C2orf77-6:5
5.1 lnc-METTL5-6:1
5.2 lnc-CCDC173-6:1