Transcript: lnc-CCDC174-2:1

Basic information

LNCipedia transcript ID: lnc-CCDC174-2:1 
LNCipedia gene ID: lnc-CCDC174-2
Ensembl Gene ID: ENSG00000283392
Ensembl Transcript ID: ENST00000635800
Location (hg19): chr3:14643542-14682950
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1620 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635800.1
Alternative gene names: ENSG00000283392.1; RP11-588H7.1; AC090952.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.6178 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC174-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C3orf19-2:2
5.0 lnc-C3orf19-2:2
5.1 lnc-MKRN2-24:1
5.2 lnc-CCDC174-2:1