Transcript: lnc-CCDC180-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC180-1:2 
LNCipedia gene ID: lnc-CCDC180-1
Ensembl Gene ID: ENSG00000254876
Ensembl Transcript ID: ENST00000375204
Location (hg19): chr9:100000765-100059596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3161 bp
Exons: 16
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000375204.2; RP11-23J9.5-001; OTTHUMT00000392359.1
Alternative gene names: ENSG00000254876.1; RP11-23J9.5; OTTHUMG00000166998.1; ENSG00000254876.5; AL590705.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1680.9841 coding 
CPAT coding probability 99.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC180-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TDRD7-1:2
4.0 lnc-C9orf174-1:7
4.1 lnc-C9orf174-1:7
5.0 lnc-C9orf174-1:7
5.1 lnc-FAM120A-103:5
5.2 lnc-CCDC180-1:2