Transcript: lnc-CCDC187-1:25

Basic information

LNCipedia transcript ID: lnc-CCDC187-1:25 
LNCipedia gene ID: lnc-CCDC187-1
Location (hg19): chr9:139159824-139166857
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 369 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00016902
Alternative gene names: XLOC_007895; linc-QSOX2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -769.2395 non-coding 
CPAT coding probability 83.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC187-1:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-QSOX2-1:6
3.1 lnc-QSOX2-1:6
4.0 lnc-QSOX2-1:6
4.1 lnc-QSOX2-1:6
5.0 lnc-QSOX2-1:6
5.1 lnc-CCDC187-1:6
5.2 lnc-CCDC187-1:25