Transcript: lnc-CCDC28A-1:3

Basic information

LNCipedia transcript ID: lnc-CCDC28A-1:3 
LNCipedia gene ID: lnc-CCDC28A-1
Ensembl Gene ID: ENSG00000225177
Ensembl Transcript ID: ENST00000458733
Location (hg19): chr6:139015527-139018425
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 703 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458733.1; RP11-390P2.4-003; OTTHUMT00000042436.1; ENST00000458733.5
Alternative gene names: ENSG00000225177.1; RP11-390P2.4; OTTHUMG00000015677.1; ENSG00000225177.5; AL590617.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.6101 non-coding 
CPAT coding probability 21.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC28A-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC28A-1:3
4.0 lnc-CCDC28A-1:3
4.1 lnc-CCDC28A-1:3
5.0 lnc-CCDC28A-1:3
5.1 lnc-GJE1-28:14
5.2 lnc-CCDC28A-1:3