Transcript: lnc-CCDC28A-1:5

Basic information

LNCipedia transcript ID: lnc-CCDC28A-1:5 
LNCipedia gene ID: lnc-CCDC28A-1
RefSeq ID: NR_033896
Location (hg19): chr6:139012805-139018425
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1001 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115210; NR_033896; NR_033896.1
Alternative gene names: FLJ46906


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.6101 non-coding 
CPAT coding probability 20.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC28A-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC28A-1:5
4.0 lnc-CCDC28A-1:5
4.1 lnc-CCDC28A-1:5
5.0 lnc-CCDC28A-1:5
5.1 lnc-GJE1-28:2
5.2 lnc-CCDC28A-1:5