Transcript: lnc-CCDC33-2:1

Basic information

LNCipedia transcript ID: lnc-CCDC33-2:1 
LNCipedia gene ID: lnc-CCDC33-2
Location (hg19): chr15:74657776-74659391
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 785 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000568496.1; CTD-2311M21.3-001; OTTHUMT00000419661.1; NONHSAT047230
Alternative gene names: ENSG00000261821.1; CTD-2311M21.3; OTTHUMG00000172649.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.2876 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC33-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC33-2:1
4.0 lnc-CCDC33-2:1
4.1 lnc-CCDC33-2:1
5.0 lnc-CCDC33-2:1
5.1 lnc-CCDC33-2:1
5.2 lnc-CCDC33-2:1