Transcript: lnc-CCDC63-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC63-1:1 
LNCipedia gene ID: lnc-CCDC63-1
Ensembl Gene ID: ENSG00000257268
Ensembl Transcript ID: ENST00000551161
Location (hg19): chr12:111269583-111283767
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551161; ENST00000551161.1; RP1-74B13.2-001; OTTHUMT00000404670.1; NONHSAT030706
Alternative gene names: ENSG00000257268; RP1-74B13.2; ENSG00000257268.1; OTTHUMG00000169533.1; AC002375.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.5811 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC63-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC63-1:1
3.1 lnc-CCDC63-1:1
4.0 lnc-CCDC63-1:1
4.1 lnc-CCDC63-1:1
5.0 lnc-CCDC63-1:1
5.1 lnc-CCDC63-1:1
5.2 lnc-CCDC63-1:1