Transcript: lnc-CCDC7-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC7-1:2 
LNCipedia gene ID: lnc-CCDC7-1
RefSeq ID: NR_104163
Location (hg19): chr10:32636292-32663416
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 298 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104163; NR_104163.1
Alternative gene names: LOC102031319


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.2517 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC7-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC7-1:2
4.0 lnc-CCDC7-1:2
4.1 lnc-CCDC7-1:2
5.0 lnc-CCDC7-1:2
5.1 lnc-NPY4R2-173:5
5.2 lnc-CCDC7-1:2