Transcript: lnc-CCDC71L-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC71L-1:2 
LNCipedia gene ID: lnc-CCDC71L-1
Ensembl Gene ID: ENSG00000243797
Ensembl Transcript ID: ENST00000485282
Location (hg19): chr7:106114318-106280354
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013221; ENST00000485282.1; CTB-111H14.1-003; OTTHUMT00000349235.1; NONHSAT122653; ENST00000485282.5
Alternative gene names: XLOC_006555; linc-NAMPT; ENSG00000243797.1; CTB-111H14.1; OTTHUMG00000157591.1; ENSG00000243797.2; ENSG00000243797.6; AC004917.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.1037 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC71L-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC71L-1:1
3.1 lnc-CCDC71L-1:2
4.0 lnc-CCDC71L-1:2
4.1 lnc-CCDC71L-1:2
5.0 lnc-CCDC71L-1:2
5.1 lnc-NRCAM-25:11
5.2 lnc-CCDC71L-1:2