Transcript: lnc-CCDC8-1:3

Basic information

LNCipedia transcript ID: lnc-CCDC8-1:3 
LNCipedia gene ID: lnc-CCDC8-1
Location (hg19): chr19:46894842-46907495
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 624 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000269151.1|FTMT27300016553.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.045 non-coding 
CPAT coding probability 11.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC8-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC8-1:3
5.0 lnc-CCDC8-1:3
5.1 lnc-RSPH6A-14:2
5.2 lnc-CCDC8-1:3