Transcript: lnc-CCDC96-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC96-1:1 
LNCipedia gene ID: lnc-CCDC96-1
Ensembl Gene ID: ENSG00000245748
Ensembl Transcript ID: ENST00000500031
RefSeq ID: NR_033828
Location (hg19): chr4:7032281-7047958
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4300 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500031; ENST00000500031.1; RP11-367J11.2-001; OTTHUMT00000358686.1; NONHSAT095035; NR_033828; NR_033828.1
Alternative gene names: ENSG00000245748; RP11-367J11.2; ENSG00000245748.1; OTTHUMG00000159982.1; AC097382.2; LOC100129931


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.8128 non-coding 
CPAT coding probability 31.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC96-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC96-1:1
3.1 lnc-CCDC96-1:1
4.0 lnc-CCDC96-1:1
4.1 lnc-CCDC96-1:1
5.0 lnc-CCDC96-1:1
5.1 lnc-PSAPL1-7:1
5.2 lnc-CCDC96-1:1